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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: FOS
wikigenes
PDBj
CellType: IMR-90
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX3321961
GSM2825449: ChIP-seq from IMR-90 (ENCLB185HFY); Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
FOS
Cell type
Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
dev stage
fetal
donor ID
ENCDO000AAX
age
16 week
sex
female
lab
Michael Snyder, Stanford
cell type
IMR-90
health state
unknown
sample type
primary cell
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
24084460
Reads aligned (%)
95.4
Duplicates removed (%)
6.3
Number of peaks
27740 (qval < 1E-05)
hg19
Number of total reads
24084460
Reads aligned (%)
94.7
Duplicates removed (%)
7.3
Number of peaks
27804 (qval < 1E-05)
Base call quality data from
DBCLS SRA